"Estimation of the population of Neutrophils Induced to Differentiate from the MPRO Mouse Promyelocytic Cell Line."

F. Ivan, Roy E. Welsch, V. Chow and J. Rajapakse. In Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, New York, NY: August 2011.

"MCAM: Multiple Clustering Analysis Methodology for Deriving Hypotheses and Insights From High-Throughput Proteomic Datasets."

Naegle, Kristen M., Roy E. Welsch, Michael B. Yaffe, Forest M. White and Douglas A. Lauffenburger. PLoS Computational Biolog Vol. 7, No. 7 (2011): 1-15.

"A Diagnostic Method for Simultaneous Feature Selection and Outlier Identification in Linear Regression."

Menjoge, Rajiv and Roy E. Welsch. Computational Statistics and Data Analysis Vol. 54, No. 12 (2010): 3181-3193.

"Outlier Detection and Robust Covariance Estimation Using Mathematical Programming."

Nguyen, Tri-Dung and Roy E. Welsch. Advances in Data Analysis and Classification Vol. 4, No. 4 (2010): 301-334.

"Robust Regression Using Semi-Definite Programming."

Welsch, Roy E. and Tri-Dung Nguyen. Computational Statistics and Data Analysis Vol. 54, (2010): 3212-3226.

"PTMSCOUT: A Web Resource for Analysis of High-throughput Post-translational Proteomic Studies."

Naegle, Kristen M., Melissa Gymrek, Brian A. Joughin, Joel P. Wagner, Roy E. Welsch, Michael B. Yaffe, Douglas A. Lauffenburger and Forest M. White. Molecular and Cellular Proteomics Vol. 9, No. 11 (2010): 2558-2570.