"Quantification of Cytoskeletal Protein Localization from High Content Images."

Shiwen Zhu, Paul Matsudaira, Roy E. Welsch and Jagath C. Rajapakse. In Proceedings of 5th IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2010), edited by Elena Marchiori, Evgeni Tsivtsivadze, Tjeerd M. H. Dijkstra, and Tom Heskes. Nijmegen, The Netherlands: November 2010.

"Toward Surface Quantification of Liver Fibrosis Progression."

He, Yuting, Chiang Huen Kang, Shuoyu Xu, Xiaoye Tuo, Scott Trasti, Dean C S Tai, Anju Mythreyi Raja, Qiwen Peng, Peter T C So, Jagath C Rajapakse, Roy E. Welsch and Hanry Yu. Journal of Biomedical Optics Vol. 15, No. 5 (2010): 1-11.

"A Cell Profiling Framework for Modeling Drug Responses from HCS Imaging."

Ng, Alvin Y. J., Jagath C. Rajapakse, Roy E. Welsch, Paul T. Matsudaira, Victor Horodincu and James G. Evans. Journal of Biomolecular Screening Vol. 15, No. 7 (2010): 858-868.

"Visualizing the Sampling Variability of Plots."

Roy E. Welsch and R. Menjoge. In Proceedings of COMPSTAT 2010, edited by G. Saporta and Y. Lechevallier. Heidelberg, Germany: August 2010.

"Sub-Population Analysis Based on Temporal Features of High Content Images."

Veronika, Merlin, James Evans, Paul Matsudaira, Roy E. Welsch and Jagath Rajapakse. BMC Bioinformatics Vol. 10, No. Suppl. 15 (2009): S4.

"Comparing and Visualizing Gene Selection and Classification Methods for Microarray."

Menjoge, Rajiv, and Roy E. Welsch. In Machine Learning in Bioinformatics, edited by Jagath C. Rajapakse and Yan-Qing Zhang, 47-68. Hoboken, NJ: Wiley, 2009.